Getting Started
CLI & Scripts Guide
API Reference
PhysioTwin4DBase
PhysioTwin4DBase.__init__()
PhysioTwin4DBase.set_log_level()
PhysioTwin4DBase.set_log_classes()
PhysioTwin4DBase.set_log_all_classes()
PhysioTwin4DBase.get_log_classes()
PhysioTwin4DBase.log_debug()
PhysioTwin4DBase.log_info()
PhysioTwin4DBase.log_warning()
PhysioTwin4DBase.log_error()
PhysioTwin4DBase.log_critical()
PhysioTwin4DBase.log_section()
PhysioTwin4DBase.log_progress()
WorkflowConvertImageToUSD
WorkflowConvertImageToUSD.__init__()
WorkflowConvertImageToUSD.process()
WorkflowConvertImageToVTK
WorkflowConvertImageToVTK.__init__()
WorkflowConvertImageToVTK.anatomy_groups
WorkflowConvertImageToVTK.process()
WorkflowConvertVTKToUSD
WorkflowConvertVTKToUSD.__init__()
WorkflowConvertVTKToUSD.process()
WorkflowCreateMeanSurface
WorkflowCreateMeanSurface.__init__()
WorkflowCreateMeanSurface.set_number_of_iterations()
WorkflowCreateMeanSurface.set_convergence_tolerance()
WorkflowCreateMeanSurface.set_alignment_transform_type()
WorkflowCreateMeanSurface.set_registration_transform_type()
WorkflowCreateMeanSurface.process()
WorkflowCreateStatisticalModel
WorkflowCreateStatisticalModel.sample_meshes
WorkflowCreateStatisticalModel.reference_mesh
WorkflowCreateStatisticalModel.number_of_pca_components
WorkflowCreateStatisticalModel.reference_spatial_resolution
WorkflowCreateStatisticalModel.reference_buffer_factor
WorkflowCreateStatisticalModel.__init__()
WorkflowCreateStatisticalModel.set_number_of_pca_components()
WorkflowCreateStatisticalModel.process()
WorkflowFitStatisticalModelToPatient
WorkflowFitStatisticalModelToPatient.template_model
WorkflowFitStatisticalModelToPatient.template_model_surface
WorkflowFitStatisticalModelToPatient.template_labelmap
WorkflowFitStatisticalModelToPatient.template_mask
WorkflowFitStatisticalModelToPatient.patient_models
WorkflowFitStatisticalModelToPatient.patient_model_surface
WorkflowFitStatisticalModelToPatient.combined_patient_model
WorkflowFitStatisticalModelToPatient.patient_image
WorkflowFitStatisticalModelToPatient.patient_labelmap
WorkflowFitStatisticalModelToPatient.patient_mask
WorkflowFitStatisticalModelToPatient.mask_dilation_mm
WorkflowFitStatisticalModelToPatient.distancemap_squared_max
WorkflowFitStatisticalModelToPatient.transform_tools
WorkflowFitStatisticalModelToPatient.registrar_ICON
WorkflowFitStatisticalModelToPatient.registrar_Greedy
WorkflowFitStatisticalModelToPatient.use_pca_registration
WorkflowFitStatisticalModelToPatient.pca_model
WorkflowFitStatisticalModelToPatient.number_of_pca_components
WorkflowFitStatisticalModelToPatient.labelmap_interior_object_ids
WorkflowFitStatisticalModelToPatient.icp_forward_point_transform
WorkflowFitStatisticalModelToPatient.icp_inverse_point_transform
WorkflowFitStatisticalModelToPatient.icp_template_model_surface
WorkflowFitStatisticalModelToPatient.icp_template_model
WorkflowFitStatisticalModelToPatient.pca_coefficients
WorkflowFitStatisticalModelToPatient.pca_template_model
WorkflowFitStatisticalModelToPatient.pca_template_model_surface
WorkflowFitStatisticalModelToPatient.l2l_forward_transform
WorkflowFitStatisticalModelToPatient.l2l_inverse_transform
WorkflowFitStatisticalModelToPatient.l2l_template_model_surface
WorkflowFitStatisticalModelToPatient.l2i_forward_transform
WorkflowFitStatisticalModelToPatient.l2i_inverse_transform
WorkflowFitStatisticalModelToPatient.l2i_template_model_surface
WorkflowFitStatisticalModelToPatient.l2i_template_labelmap
WorkflowFitStatisticalModelToPatient.registered_template_model
WorkflowFitStatisticalModelToPatient.registered_template_model_surface
WorkflowFitStatisticalModelToPatient.__init__()
WorkflowFitStatisticalModelToPatient.set_mask_dilation_mm()
WorkflowFitStatisticalModelToPatient.set_distancemap_squared_max()
WorkflowFitStatisticalModelToPatient.set_labelmap_to_labelmap_icon_weights_path()
WorkflowFitStatisticalModelToPatient.set_use_pca_registration()
WorkflowFitStatisticalModelToPatient.set_use_labelmap_to_labelmap_registration()
WorkflowFitStatisticalModelToPatient.set_use_labelmap_to_image_registration()
WorkflowFitStatisticalModelToPatient.register_model_to_model_icp()
WorkflowFitStatisticalModelToPatient.register_model_to_model_pca()
WorkflowFitStatisticalModelToPatient.register_labelmap_to_labelmap()
WorkflowFitStatisticalModelToPatient.register_labelmap_to_image()
WorkflowFitStatisticalModelToPatient.transform_model()
WorkflowFitStatisticalModelToPatient.process()
WorkflowReconstructHighres4DCT
WorkflowReconstructHighres4DCT.time_series_images
WorkflowReconstructHighres4DCT.reference_image
WorkflowReconstructHighres4DCT.reference_time_frame
WorkflowReconstructHighres4DCT.register_reference_time_frame_to_reference_image
WorkflowReconstructHighres4DCT.upsample_to_fixed_resolution
WorkflowReconstructHighres4DCT.registrar
WorkflowReconstructHighres4DCT.forward_transforms
WorkflowReconstructHighres4DCT.inverse_transforms
WorkflowReconstructHighres4DCT.losses
WorkflowReconstructHighres4DCT.reconstructed_images
WorkflowReconstructHighres4DCT.__init__()
WorkflowReconstructHighres4DCT.set_modality()
WorkflowReconstructHighres4DCT.set_mask_dilation()
WorkflowReconstructHighres4DCT.set_fixed_mask()
WorkflowReconstructHighres4DCT.set_moving_masks()
WorkflowReconstructHighres4DCT.register_time_series()
WorkflowReconstructHighres4DCT.set_upsample_to_fixed_resolution()
WorkflowReconstructHighres4DCT.reconstruct_time_series()
WorkflowReconstructHighres4DCT.process()
WorkflowFinetuneICONRegistration
WorkflowFinetuneICONRegistration.subject_image_files
WorkflowFinetuneICONRegistration.output_dir
WorkflowFinetuneICONRegistration.finetune_name
WorkflowFinetuneICONRegistration.subject_ids
WorkflowFinetuneICONRegistration.subject_labelmap_files
WorkflowFinetuneICONRegistration.subject_mask_files
WorkflowFinetuneICONRegistration.subject_landmark_files
WorkflowFinetuneICONRegistration.__init__()
WorkflowFinetuneICONRegistration.prepare_dataset()
WorkflowFinetuneICONRegistration.prepare_config()
WorkflowFinetuneICONRegistration.expected_weights_path()
WorkflowFinetuneICONRegistration.process()
RegisterImagesBase
RegisterImagesANTS
RegisterImagesGreedy
RegisterImagesICON
RegisterImagesChain
RegisterImagesGreedyICON
RegisterTimeSeriesImages
RegisterModelsICP
RegisterModelsICPITK
RegisterModelsDistanceMaps
RegisterModelsPCA
SubjectManifest
PhaseEntry
parse_manifest()
load_target_array()
load_pca_coefficients()
build_node_features()
mesh_to_edge_index()
compute_edge_features()
reconstruct_reference_points()
PhaseSampleDataset
WorkflowTrainPhysicsNeMo
TrainPhysicsNeMoBase
TrainPhysicsNeMoMGN
TrainPhysicsNeMoMLP
WorkflowInferPhysicsNeMo
WorkflowInferMovement
InferPhysicsNeMoBase
InferPhysicsNeMoMGN
InferPhysicsNeMoMLP
WorkflowEvaluateMovement
main()
Developer Guides
Contributing
Additional Resources
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