Getting Started
CLI & Scripts Guide
API Reference
PhysioMotion4DBase
PhysioMotion4DBase.__init__()
PhysioMotion4DBase.set_log_level()
PhysioMotion4DBase.set_log_classes()
PhysioMotion4DBase.set_log_all_classes()
PhysioMotion4DBase.get_log_classes()
PhysioMotion4DBase.log_debug()
PhysioMotion4DBase.log_info()
PhysioMotion4DBase.log_warning()
PhysioMotion4DBase.log_error()
PhysioMotion4DBase.log_critical()
PhysioMotion4DBase.log_section()
PhysioMotion4DBase.log_progress()
WorkflowConvertHeartGatedCTToUSD
WorkflowConvertHeartGatedCTToUSD.__init__()
WorkflowConvertHeartGatedCTToUSD.process()
WorkflowConvertCTToVTK
WorkflowConvertCTToVTK.ANATOMY_GROUPS
WorkflowConvertCTToVTK.SEGMENTATION_METHODS
WorkflowConvertCTToVTK.__init__()
WorkflowConvertCTToVTK.run_workflow()
WorkflowConvertCTToVTK.save_surfaces()
WorkflowConvertCTToVTK.save_meshes()
WorkflowConvertCTToVTK.save_combined_surface()
WorkflowConvertCTToVTK.save_combined_mesh()
WorkflowConvertVTKToUSD
WorkflowConvertVTKToUSD.__init__()
WorkflowConvertVTKToUSD.discover_time_series()
WorkflowConvertVTKToUSD.run()
WorkflowCreateStatisticalModel
WorkflowCreateStatisticalModel.sample_meshes
WorkflowCreateStatisticalModel.reference_mesh
WorkflowCreateStatisticalModel.pca_number_of_components
WorkflowCreateStatisticalModel.reference_spatial_resolution
WorkflowCreateStatisticalModel.reference_buffer_factor
WorkflowCreateStatisticalModel.__init__()
WorkflowCreateStatisticalModel.set_pca_number_of_components()
WorkflowCreateStatisticalModel.run_workflow()
WorkflowFitStatisticalModelToPatient
WorkflowFitStatisticalModelToPatient.template_model
WorkflowFitStatisticalModelToPatient.template_model_surface
WorkflowFitStatisticalModelToPatient.template_model_mask
WorkflowFitStatisticalModelToPatient.template_model_roi
WorkflowFitStatisticalModelToPatient.patient_models
WorkflowFitStatisticalModelToPatient.patient_model_surface
WorkflowFitStatisticalModelToPatient.combined_patient_model
WorkflowFitStatisticalModelToPatient.patient_image
WorkflowFitStatisticalModelToPatient.patient_mask
WorkflowFitStatisticalModelToPatient.patient_roi
WorkflowFitStatisticalModelToPatient.mask_dilation_mm
WorkflowFitStatisticalModelToPatient.roi_dilation_mm
WorkflowFitStatisticalModelToPatient.transform_tools
WorkflowFitStatisticalModelToPatient.registrar_icon
WorkflowFitStatisticalModelToPatient.registrar_ants
WorkflowFitStatisticalModelToPatient.use_pca_registration
WorkflowFitStatisticalModelToPatient.pca_model
WorkflowFitStatisticalModelToPatient.pca_number_of_modes
WorkflowFitStatisticalModelToPatient.icp_forward_point_transform
WorkflowFitStatisticalModelToPatient.icp_inverse_point_transform
WorkflowFitStatisticalModelToPatient.icp_template_model_surface
WorkflowFitStatisticalModelToPatient.icp_template_model
WorkflowFitStatisticalModelToPatient.pca_coefficients
WorkflowFitStatisticalModelToPatient.pca_template_model
WorkflowFitStatisticalModelToPatient.pca_template_model_surface
WorkflowFitStatisticalModelToPatient.m2m_forward_transform
WorkflowFitStatisticalModelToPatient.m2m_inverse_transform
WorkflowFitStatisticalModelToPatient.m2m_template_model_surface
WorkflowFitStatisticalModelToPatient.m2i_forward_transform
WorkflowFitStatisticalModelToPatient.m2i_inverse_transform
WorkflowFitStatisticalModelToPatient.m2i_template_model_surface
WorkflowFitStatisticalModelToPatient.m2i_template_labelmap
WorkflowFitStatisticalModelToPatient.registered_template_model
WorkflowFitStatisticalModelToPatient.registered_template_model_surface
WorkflowFitStatisticalModelToPatient.__init__()
WorkflowFitStatisticalModelToPatient.set_mask_dilation_mm()
WorkflowFitStatisticalModelToPatient.set_roi_dilation_mm()
WorkflowFitStatisticalModelToPatient.set_use_pca_registration()
WorkflowFitStatisticalModelToPatient.set_use_mask_to_mask_registration()
WorkflowFitStatisticalModelToPatient.set_use_mask_to_image_registration()
WorkflowFitStatisticalModelToPatient.register_model_to_model_icp()
WorkflowFitStatisticalModelToPatient.register_model_to_model_pca()
WorkflowFitStatisticalModelToPatient.register_mask_to_mask()
WorkflowFitStatisticalModelToPatient.register_labelmap_to_image()
WorkflowFitStatisticalModelToPatient.transform_model()
WorkflowFitStatisticalModelToPatient.run_workflow()
WorkflowReconstructHighres4DCT
WorkflowReconstructHighres4DCT.time_series_images
WorkflowReconstructHighres4DCT.fixed_image
WorkflowReconstructHighres4DCT.reference_frame
WorkflowReconstructHighres4DCT.register_reference
WorkflowReconstructHighres4DCT.prior_weight
WorkflowReconstructHighres4DCT.upsample_to_fixed_resolution
WorkflowReconstructHighres4DCT.registration_method
WorkflowReconstructHighres4DCT.number_of_iterations
WorkflowReconstructHighres4DCT.registrar
WorkflowReconstructHighres4DCT.forward_transforms
WorkflowReconstructHighres4DCT.inverse_transforms
WorkflowReconstructHighres4DCT.losses
WorkflowReconstructHighres4DCT.reconstructed_images
WorkflowReconstructHighres4DCT.__init__()
WorkflowReconstructHighres4DCT.set_number_of_iterations_ants()
WorkflowReconstructHighres4DCT.set_number_of_iterations_icon()
WorkflowReconstructHighres4DCT.set_prior_weight()
WorkflowReconstructHighres4DCT.set_modality()
WorkflowReconstructHighres4DCT.set_mask_dilation()
WorkflowReconstructHighres4DCT.set_fixed_mask()
WorkflowReconstructHighres4DCT.set_moving_masks()
WorkflowReconstructHighres4DCT.register_time_series()
WorkflowReconstructHighres4DCT.reconstruct_time_series()
WorkflowReconstructHighres4DCT.run_workflow()
RegisterImagesBase
RegisterImagesANTs
RegisterImagesGreedy
RegisterImagesICON
RegisterTimeSeriesImages
RegisterModelsICP
RegisterModelsICPITK
RegisterModelsDistanceMaps
RegisterModelsPCA
main()
Developer Guides
Contributing
Additional Resources
Utilities for converting 4D NRRD files to 3D sequences.
Initialize the NRRD 4D to 3D converter.
log_level (int | str) – Logging level (default: logging.INFO)
int
str
None
Any
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